PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_157.44
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family HSF
Protein Properties Length: 488aa    MW: 54656.4 Da    PI: 6.3586
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_157.44genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.99.2e-35271172101
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   Fl k+ye+++d++++ ++sws+n++sfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+         weF+
  evm.model.supercontig_157.44  27 FLLKTYEMVDDSATDGIVSWSSNNHSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFA 98 
                                   9****************************************************************999.........**** PP

                                   ESXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkk 101
                                   ++ F k++k+ll++i+r+k
  evm.model.supercontig_157.44  99 NEDFVKDQKHLLKNIHRRK 117
                                   *****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.3E-6023116IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.29E-3623116IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.9E-3723116IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.0E-3027116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-192750IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-197890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MEVAAVTSSG GSVGGVGGAG GGGPAPFLLK TYEMVDDSAT DGIVSWSSNN HSFVVWNPPE  60
FARLLLPTYF KHNNFSSFIR QLNTYGFRKI DPERWEFANE DFVKDQKHLL KNIHRRKPIH  120
SHGNPHGSTV DPERAAFDEE IGTLSRDKDM LEANILRSKQ QRSAEKLQLE EMTQRLDNME  180
RRQEVLITTL EKAVRDPTFV EHLARKIEST DFSAYSKKRR LPQLEHSKPI MESSLLDNSS  240
SSRAEFGNIF HQDFSNKLRL ELSPAISDIN LVSHSTQCSN EDGESPNRKI SEGDPKDVQT  300
RTDAHSFAPD GLELSDTGTF PRKIPPNGNS RMYSLQQRLN STEEVDGHVS CHLNLTLASS  360
SVPVNKSSCP TRMPQQNQEI RKSPESIFNV ISKGSDVRGL PKKKNTPDEN TPISSSQEPQ  420
DNNQGRPAAP ARVNDLFWEQ FLTERPGSSD NEEASSTYRA NPYEEQEDRR LGHGISRNSR  480
NIDQLSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-211811617129Heat shock factor protein 1
5d5v_B1e-211811617129Heat shock factor protein 1
5d5v_D1e-211811617129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011003631.10.0PREDICTED: heat stress transcription factor A-5-like
SwissprotQ94BZ50.0HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBLB9GFJ00.0B9GFJ0_POPTR; Heat Stress Transcription Factor family protein
STRINGPOPTR_0001s32810.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101342433
Representative plantOGRP97161012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.10.0HSF family protein